choose_features_clustering
choose_features_clustering(
heteroplasmy_matrix,
allele_matrix,
cluster,
top_pos,
deepSplit_param,
minClusterSize_param,
min_value_vector,
threshold = 0.2,
index,
max_frac = 0.7
)Third element returned by get_heteroplasmy.
Fourth element returned by get_heteroplasmy.
Vector specifying a partition of the samples.
Numeric value. Number of bases sorted with decreasing values of distance variance (see section Details below) among samples. If relevant_bases=NULL, then the bases for performing hierarchical clustering are the ones whose relative variance (variance of the base divided sum of variance among top_pos bases) is above min_value.
Integer value between 0 and 4 for the deepSplit parameter of the function cutreeHybrid. See section Details below.
Integer value specifying the minClusterSize parameter of the function cutreeHybrid. See section Details below.
Numeric vector. For each value in the vector, the function clustering_angular_distance is run with parameter min_value equal to one element of the vector min_value_vector.
Numeric value. If a base has heteroplasmy greater or equal to threshold in more than max_frac of cells, then the base is not considered for down stream analysis.
Fifth element returned by get_heteroplasmy.
Numeric value.If a base has heteroplasmy greater or equal to threshold in more than max_frac of cells, then the base is not considered for down stream analysis.
Clustree plot.