plot_allele_frequency

plot_allele_frequency(
  position,
  heteroplasmy_matrix,
  allele_matrix,
  cluster,
  names_allele_qc,
  names_position_qc,
  size_text,
  index
)

Arguments

position: Character name of the base to plot.
heteroplasmy_matrix: Third element returned by get_heteroplasmy.
allele_matrix: Fourth element returned by get_heteroplasmy.
cluster: Vector specifying a partition of the samples.
names_allele_qc: Character vector with length equal to n_col of allele_matrix. Each element specifies the name of the base and the allele.
names_position_qc: Character vector with length equal to n_col of allele_matrix. Each element specifies the name of the base.
size_text: Character specifying the size of the text for gridExtra function grid.arrange)
index: Fifth element returned by get_heteroplasmy.

grid.arrange plot of allele frequencies of a specific base across samples divided according to cluster.