plot_genome_coverage

plot_genome_coverage(biomart_file, path_fasta, chr_name, heteroplasmy_matrix)

Arguments

biomart_file: Character string with full path to the txt file downloaded from BioMart https://m.ensembl.org/info/data/biomart/index.html . It must have the following five columns:Gene.stable.ID, Gene.name, Gene.start..bp., Gene.end..bp., Chromosome.scaffold.name
path_fasta: Character string with full path to the fasta file of the genomic region of interest. It should be the same file used in get_raw_counts_allele.
chr_name: Character specifying the name of the chromosome of interest. It must be one of the names in the Chromosome.scaffold.name column from the biomart_file.
heteroplasmy_matrix: Third element returned by get_heteroplasmy.

Plot as returned by karyoploteR package.